Folding of the cocaine aptamer studied by EPR and fluorescence spectroscopies using the bifunctional spectroscopic probe Ç

The cocaine aptamer is a DNA molecule that binds cocaine at the junction of three helices. The bifunctional spectroscopic probe Ç was incorporated independently into three different positions of the aptamer and changes in structure and dynamics upon addition of the cocaine ligand were studied. Nucleoside Ç contains a rigid nitroxide spin label and can be studied directly by electron paramagnetic resonance (EPR) spectroscopy and fluorescence spectroscopy after reduction of the nitroxide to yield the fluoroside Ç^f. Both the EPR and the fluorescence data for aptamer 2 indicate that helix III is formed before cocaine binding. Upon addition of cocaine, increased fluorescence of a fully base-paired Ç^f, placed at the three-way junction in helix III, was observed and is consistent with a helical tilt from a coaxial stack of helices II and III. EPR and fluorescence data clearly show that helix I is formed upon addition of cocaine, concomitant with the formation of the Y-shaped three-way helical junction. The EPR data indicate that nucleotides in helix I are more mobile than nucleotides in regular duplex regions and may reflect increased dynamics due to the short length of helix I.     

Atlantic salmon straying from the River Imsa

Mean estimated straying rate for Atlantic salmon Salmo salar L. leaving the River Imsa as smolts during 1976–1999 was 15% for hatchery fish and 6% for wild conspecifics. Hatchery Atlantic salmon selected for production traits during four or more generations strayed >50%. The straying rate was higher for Atlantic salmon staying 2 rather than 1 year at sea before attaining maturity. For spawning, 96% of the strays entered streams within 420 km from the River Imsa, and c . 80% entered streams within 60 km of the mouth of the River Imsa, whether the fish were wild or hatchery released. Within the 60 km zone, the number of strays caught in a river increased with the Atlantic salmon catch in that river, but there was no significant relationship between straying rate and water discharge or distance from the river to the River Imsa. The observed straying rate of hatchery Atlantic salmon decreased with increasing number of fish entering the River Imsa. Sexual maturation as parr did not influence the tendency to stray. The results suggest that the establishment of temporary zones, free of fish farms, outside important Atlantic salmon rivers by the fisheries authorities in Norway should be large, whole fjords, to be effective.     

Colonisation ability of the threatened tenebrionid beetle Oplocephala haemorrhoidalis and its common relative Bolitophagus reticulatus

Abstract. 1. Life-history traits associated with colonisation ability were compared in the threatened tenebrionid beetle Oplocephala haemorrhoidalis and its common relative Bolitophagus reticulatus . Both species feed and breed exclusively in fruiting bodies of the wood-decaying fungus Fomes fomentarius .
2. The presence and status of flight wings, flight muscles, and mature eggs were determined by dissection. Flight willingness was studied in a field experiment, and flight duration in a flight-mill experiment.
3. Females of O. haemorrhoidalis had fewer but larger eggs in their abdomen than B. reticulatus females.
4. All beetles of both species had fully developed flight wings but a larger proportion of B. reticulatus than O. haemorrhoidalis had developed flight muscles.
5. Bolitophagus reticulatus was more willing to take off than O. haemorrhoidalis , however both species, especially O. haemorrhoidalis , were powerful fliers, with many individuals being able to fly several kilometres. Oplocephala haemorrhoidalis tended to make few flights of long duration whereas B. reticulatus made several, but mostly shorter, flights.
6. The results indicate that B. reticulatus has a suite of life-history traits that makes it better adapted than O. haemorrhoidalis to exploit the scattered trees with fruiting bodies present in managed forests. This may explain why O. haemorrhoidalis is restricted primarily to sites with a high density of suitable substrates that have been available continuously for a long time.     

Population dynamics and reproduction of Northern Lapwings Vanellus vanellus in a meadow restoration area in central Sweden

To investigate the effectiveness of a meadow restoration programme, we studied the relationships between population changes and environmental changes, return rates and hatching success in a population of Northern Lapwings Vanellus vanellus. The study was performed on mixed farmland (59 km²) in central Sweden, an area that underwent extensive meadow restoration between 1985 and 1994. The study included more than 2600 nests, supplemented with observations of 127 individually colour-ringed Northern Lapwings. The breeding population varied (2.7–5.3 pairs/km²), but showed no significant trend with time. The population increased in years with high spring flooding levels. Population size was unrelated to demographic factors (e.g. hatching success the previous year (14–50%), and return rate). Lapwings moved considerably between years and their nest site fidelity was unrelated to previous hatching success or other factors, suggesting that changes in habitat quality and migration between populations were important in regulating population size. Recent extensive meadow restoration did not seem to aid the Northern Lapwing population; birds continued nesting on tillage even though most nests were destroyed by farming activities. A relatively high relaying frequency improved hatching success, which was still lowest in the most preferred habitats (spring sown crops, total hatching success c. 30%). The few Northern Lapwings breeding in the least preferred habitats (meadows and cultivated grassland) had a better hatching success (> 70% total hatching success), suggesting that habitat selection was not determined by hatching success. From these results, recommendations are made for the management of Northern Lapwing (and associated species) populations on farmland.     

Effects of Melanocortin 1 Receptor Agonists in Experimental Nephropathies

Nephrotic syndrome, characterized by massive proteinuria, is caused by a large group of diseases including membranous nephropathy (MN) and focal segmental glomerulosclerosis (FSGS). Although the underlying mechanisms are beginning to unravel, therapy is unspecific and far from efficient. It has been suggested that adrenocorticotropic hormone (ACTH) has beneficial effects in patients with MN and possibly in other nephrotic diseases. We have previously reported that ACTH may act directly on podocytes through the melanocortin 1 receptor (MC1R). In the present study, we evaluate the effect of highly specific MC1R agonists in two different nephrotic disease models. Experimental MN: Passive Heymann nephritis (PHN) was induced in rats that were treated for four weeks with MS05, a selective MC1R agonist, or saline. The degree of albuminuria was significantly reduced over time and the effect was sustained one week after treatment withdrawal (p<0.05). Experimental FSGS: Based on a dose-response study, two doses of adriamycin were used for induction of nephropathy in Balb/c mice. Mice were treated with either a synthetic MC1R agonist (BMS-470539), with α-melanocyte stimulating hormone (α-MSH) or with saline. There was no beneficial effect of treatment. In summary, MC1R agonists reduce albuminuria and improve morphology in experimentally induced MN whereas they have no effect in experimental FSGS. The results illustrate the differences in these podocytopathies in terms of signaling mechanisms underlying proteinuria, and progression of disease.     

Reduced Expression of the Polymeric Immunoglobulin Receptor in Pancreatic and Periampullary Adenocarcinoma Signifies Tumour Progression and Poor Prognosis

The polymeric immunoglobulin receptor (pIgR) is a key component of the mucosal immune system that mediates epithelial transcytosis of immunoglobulins. High pIgR expression has been reported to correlate with a less aggressive tumour phenotype and an improved prognosis in several human cancer types. Here, we examined the expression and prognostic significance of pIgR in pancreatic and periampullary adenocarcinoma. The study cohort encompasses a consecutive series of 175 patients surgically treated with pancreaticoduodenectomy for pancreatic and periampullary adenocarcinoma in Malmö and Lund University Hospitals, Sweden, between 2001–2011. Tissue microarrays were constructed from primary tumours (n = 175) and paired lymph node metastases (n = 105). A multiplied score was calculated from the fraction and intensity of pIgR staining. Classification and regression tree analysis was used to select the prognostic cut-off. Unadjusted and adjusted hazard ratios (HR) for death and recurrence within 5 years were calculated. pIgR expression could be evaluated in 172/175 (98.3%) primary tumours and in 96/105 (91.4%) lymph node metastases. pIgR expression was significantly down-regulated in lymph node metastases as compared with primary tumours (p = 0.018). Low pIgR expression was significantly associated with poor differentiation grade (p<0.001), perineural growth (p = 0.027), lymphatic invasion (p = 0.016), vascular invasion (p = 0.033) and infiltration of the peripancreatic fat (p = 0.039). In the entire cohort, low pIgR expression was significantly associated with an impaired 5-year survival (HR = 2.99, 95% confidence interval (CI) 1.71–5.25) and early recurrence (HR = 2.89, 95% CI 1.67–4.98). This association remained significant for survival after adjustment for conventional clinicopathological factors, tumour origin and adjuvant treatment (HR = 1.98, 95% CI 1.10–3.57). These results demonstrate, for the first time, that high tumour-specific pIgR expression signifies a more favourable tumour phenotype and that low expression independently predicts a shorter survival in patients with pancreatic and periampullary cancer. The mechanistic basis for the putative tumour suppressing properties of pIgR in these cancers merits further study.     

Selectins Mediate Small Cell Lung Cancer Systemic Metastasis

Metastasis formation is the major reason for the extremely poor prognosis in small cell lung cancer (SCLC) patients. The molecular interaction partners regulating metastasis formation in SCLC are largely unidentified, however, from other tumor entities it is known that tumor cells use the adhesion molecules of the leukocyte adhesion cascade to attach to the endothelium at the site of the future metastasis. Using the human OH-1 SCLC line as a model, we found that these cells expressed E- and P-selectin binding sites, which could be in part attributed to the selectin binding carbohydrate motif sialyl Lewis A. In addition, protein backbones known to carry these glycotopes in other cell lines including PSGL-1, CD44 and CEA could be detected in in vitro and in vivo grown OH1 SCLC cells. By intravital microscopy of murine mesenterial vasculature we could capture SCLC cells while rolling along vessel walls demonstrating that SCLC cells mimic leukocyte rolling behavior in terms of selectin and selectin ligand interaction in vivo indicating that this mechanism might indeed be important for SCLC cells to seed distant metastases. Accordingly, formation of spontaneous distant metastases was reduced by 50% when OH-1 cells were xenografted into E-/P-selectin-deficient mice compared with wild type mice (p = 0.0181). However, as metastasis formation was not completely abrogated in selectin deficient mice, we concluded that this adhesion cascade is redundant and that other molecules of this cascade mediate metastasis formation as well. Using several of these adhesion molecules as interaction partners presumably make SCLC cells so highly metastatic.     

Random epigenetic modulation of CHO cells by repeated knockdown of DNA methyltransferases increases population diversity and enables sorting of cells with higher production capacities

Chinese hamster ovary (CHO) cells produce a large share of today's biopharmaceuticals. Still, the generation of satisfactory producer cell lines is a tedious undertaking. Recently, it was found that CHO cells, when exposed to new environmental conditions, modify their epigenome, suggesting that cells adapt their gene expression pattern to handle new challenges. The major aim of the present study was to employ artificially induced, random changes in the DNA-methylation pattern of CHO cells to diversify cell populations and consequently increase the finding of cell lines with improved cellular characteristics. To achieve this, DNA methyltransferases and/or the ten-eleven translocation enzymes were downregulated by RNA interference over a time span of ∼16 days. Methylation analysis of the resulting cell pools revealed that the knockdown of DNA methyltransferases was highly effective in randomly demethylating the genome. The same approach, when applied to stable CHO producer cells resulted in (a) an increased productivity diversity in the cell population, and (b) a higher number of outliers within the population, which resulted in higher specific productivity and titer in the sorted cells. These findings suggest that epigenetics play a previously underestimated, but actually important role in defining the overall cellular behavior of production clones.